| RNAmmer predicts ribosomal RNA genes in full genome sequences by utilising two levels of Hidden Markov Models: An initial spotter model searches both strands. The spotter model is constructed from highly conserved loci within a structural alignment of known rRNA sequences. Once the spotter model detects an approximate position of a gene, flanking regions are extracted and parsed to the full model which matches the entire gene. By enabling a two-level approach it is avoided to run a full model through an entire genome sequence allowing faster predictions. |
hg clone https://toolshed.g2.bx.psu.edu/repos/lionelguy/rnammer
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| RNAmmer predicts 5S/8S, 16S/18S, and 23S/28S ribosomal RNA in genome sequences. | 0.1 | any | |