Repository nextdenovo
Name: nextdenovo
Owner: bgruening
Synopsis: String graph-based de novo assembler for long reads
NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses
a "correct-then-assemble" strategy similar to canu (no correction step for PacBio HiFi reads), but
requires significantly less computing resources and storages. It also detects different variants
of the mitogenome present in the sample, and chooses a final consensus sequence.
Content homepage: https://github.com/Nextomics/NextDenovo
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/nextdenovo
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/nextdenovo/733eab97b979
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/nextdenovo
Type: unrestricted
Revision: 0:733eab97b979
This revision can be installed: True
Times cloned / installed: 91

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
string graph-based de novo assembler for long reads 2.5.0+galaxy0 21.05

Categories
Assembly - Tools for working with assemblies