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Repository chewbbaca_extractcgmlst
Name: chewbbaca_extractcgmlst
Owner: iuc
Synopsis: Wrapper for chewBBACA ExtractCgMLST.
chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci. chewBBACA performs the schema creation and allele calls on complete or draft genomes.
Content homepage: https://github.com/B-UMMI/chewBBACA/tree/master
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_extractcgmlst/743125c3ac12
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/chewbbaca_extractcgmlst
Type: unrestricted
Revision: 0:743125c3ac12
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Contents of this repository

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Name Description Version Minimum Galaxy Version
Determine the set of loci that constitute the core genome 3.3.3+galaxy0 22.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA