| rMATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. rMATS handles replicate RNA-Seq data from both paired and unpaired study design. |
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/rmats
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| detect differential alternative splicing events from RNA-Seq | 4.1.2+galaxy0 | 16.01 | |