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Repository bdds
Name: bdds
Owner: sjung
Synopsis: BDDS Platform and Tool Suite for DNA footprinting
Fseq/Wellington, hint and piq are used for DNA footprinting
Link to this repository: https://toolshed.g2.bx.psu.edu/view/sjung/bdds/777faad85c7c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/sjung/bdds
Type: unrestricted
Revision: 8:777faad85c7c
This revision can be installed: True
Times cloned / installed: 439

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
accurate identification of digital genomic footprints from DNase-seq data 0.2.5 any
predicts TFBSs given open chromatin data HINT: 1.1.1 any
A Feature Density Estimator for High-Throughput Sequence Tags F-Seq: 1.85 any
identify TFBSs at corresponding motifs from DNase-Seq experiments PIQ: 1.3 any

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis