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Repository gemini_query

Name: gemini_query

Owner: iuc

Synopsis: Wrapper for the gemini tool suite: GEMINI query

Detailed description:

The intent of GEMINI (GEnome MINIing) is to provide a simple, flexible, and powerful framework for exploring genetic variation for
personal and medical genetics. GEMINI is unique in that it integrates genetic variation (from VCF files) with a wealth of genome
annotations into a unified database framework. Using this integrated database as the analysis framework, we aim to leverage the
expressive power of SQL for data analysis, while attempting to overcome the fundamental challenges associated with using databases for
very large (e.g. 1,000,000 variants times 1,000 samples yields one billion genotypes) datasets. In addition, by defining sample
relationships with a PED file, GEMINI allows one to explore and test for variants that meet specific inheritance models (e.g.,
recessive, dominant, etc.).

Content homepage: https://github.com/arq5x/gemini

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/gemini_query/77a1e60fd1de

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gemini_query

Type: unrestricted

Revision: 8:77a1e60fd1de

This revision can be installed: True

Times cloned / installed: 1360