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Repository tophat2_with_gene_annotations
Name: tophat2_with_gene_annotations
Owner: scottx611x
Synopsis: Tophat2 with edited tool-wrapper and macros
Tophat2 with edited tool-wrapper and macros that utilize gene_annotations
Link to this repository: https://toolshed.g2.bx.psu.edu/view/scottx611x/tophat2_with_gene_annotations/788015c33cfb
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/scottx611x/tophat2_with_gene_annotations
Type: unrestricted
Revision: 36:788015c33cfb
This revision can be installed: True
Times cloned / installed: 528
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository data_manager_fetch_gene_annotation revision 16e961b2f35c owned by scottx611x
Repository package_bowtie_2_2_5 revision 30bd7eaeddbf owned by iuc
Repository package_tophat_2_1_0 revision ed92d4c8e7f6 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.2.5 package
tophat 2.1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Gapped-read mapper for RNA-seq data 2.1.0 any

Categories
RNA - Utilities for RNA