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Repository spades
Name: spades
Owner: nml
Synopsis: Genome assembler for genomes of regular and single-cell projects.
SPAdes is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.
Content homepage: https://github.com/ablab/spades
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/nml/spades/80f079961dc9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/spades
Type: unrestricted
Revision: 1:80f079961dc9
This revision can be installed: True
Times cloned / installed: 3954
Dependencies of this repository

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Repository package_spades_3_6_2 revision af7dfb1c3f42 owned by nml

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
spades 3.6.2 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
SPAdes genome assembler for regular and single-cell projects 1.2 any

Categories
Assembly - Tools for working with assemblies