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Repository breseq
Name: breseq
Owner: iuc
Synopsis: Predicts mutations in microbial genomes
breseq is a computational pipeline for the analysis of short-read re-sequencing data (e.g. Illumina, 454, IonTorrent, etc.). It uses reference-based alignment approaches to predict mutations in a sample relative to an already sequenced genome. breseq is intended for microbial genomes (<10 Mb) and re-sequenced samples that are only slightly diverged from the reference sequence (<1 mutation per 1000 bp).
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/breseq
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Revision: 2:82fb5e3bb93e
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Contents of this repository

Name Description Version Minimum Galaxy Version
find mutations in haploid microbial genomes 0.35.5+0 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA