Repository rtg_investigator
Name: rtg_investigator
Owner: diego
Synopsis: Mapping and Analysis Software for NGS Platforms Roche, Illumina and Complete Genomics
Obtained from Real Time Genomics Software Engineer, Dr. Richard Littin.  Take a look at their website at 
http://www.realtimegenomics.com/

This package has not been certified by the platform vendors.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/diego/rtg_investigator/8593828f91e7
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/diego/rtg_investigator
Type: unrestricted
Revision: 1:8593828f91e7
This revision can be installed: True
Times cloned / installed: 390

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
to SDF with rtg format 1.0.0 any
with RTG cgsim 1.0.0 any
from SAM files with rtg snp 1.0.0 any
coverage 1.0.0 any
with RTG SNP intersection 1.0.0 any
with rtg snpsim 1.0.0 any
from SDF with sdf2fasta 1.0.0 any
with RTG readsim 1.0.0 any
reads with rtg mapf 1.0.0 any
to SDF with rtg cg2sdf 1.0.0 any
to SDF with rtg format 1.0.0 any
reads with rtg cg map 1.0.0 any
reads with rtg map 1.0.0 any
protein reads with rtg mapx 1.0.0 any
with rtg genomesim 1.0.0 any

Categories
Assembly - Tools for working with assemblies
Convert Formats - Tools for converting data formats
Data Source - Tools for retrieving data from external data sources
Fasta Manipulation - Tools for manipulating fasta data
Metagenomics - Tools enabling the study of metagenomes
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
SAM - Tools for manipulating alignments in the SAM format
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Statistics - Tools for generating statistics