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Repository seq_filter_by_id
Name: seq_filter_by_id
Owner: peterjc
Synopsis: Filter sequences by ID
Divide a FASTA, FASTQ or SFF file in two, those sequences with or without an ID present
in the specified column(s) of a tabular file.

Example uses include filtering based on search results from a tool like NCBI BLAST,
TMHMM, SignalP, or a read mapper. i.e. Split your sequences according to whether
or not they have a BLAST match, transmembrane domain, signal peptide, or map to
the reference sequence.

This tool is a short Python script (using Biopython and Galaxy library functions).
It requires Biopython to be installed.

Note this tool replaces my three previously separate tools for FASTA, FASTA and
SFF filtering by ID.
Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id/85ef5f5a0562
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id
Type: unrestricted
Revision: 12:85ef5f5a0562
This revision can be installed: True
Times cloned / installed: 4507

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from a tabular file 0.2.9 16.01

Categories
Fasta Manipulation - Tools for manipulating fasta data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Text Manipulation - Tools for manipulating data