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Repository msnbase_readmsdata

Name: msnbase_readmsdata

Owner: lecorguille

Synopsis: [Metabolomics][W4M][LC-MS] MSnbase R Package - Preprocessing - Imports Mass-Spectrometry Data Files

Detailed description:

Reads XML-based mass-spectrometry data files. Can be chained with the W4M
xcms.findChromPeaks tool
Part of the W4M project: http://workflow4metabolomics.org
XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html

Content homepage: https://github.com/sneumann/xcms

Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/lecorguille/msnbase_readmsdata/86a20118e743

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata

Type: unrestricted

Revision: 11:86a20118e743

This revision can be installed: True

Times cloned / installed: 1277

Repository README files - may contain important installation or license information

Readme files

Changelog/News -------------- **Version 2.8.2.1 - 30/04/2019** - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. **Version 2.8.2.0 - 08/04/2019** - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. **Version 2.4.0.0 - 29/03/2018** - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks.

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
MSnbase readMSData View tool metadata	Imports mass-spectrometry data files	2.8.2.1	16.01