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Repository dram_neighborhoods

Name: dram_neighborhoods

Owner: iuc

Synopsis: Wrapper for DRAM: DRAM find neighborhoods

Detailed description:

DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes
and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using UniRef90, PFAM, dbCAN,
RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user databases. DRAM is run in two
stages. First an annotation step to assign database identifiers to genes and then a distill step to curate
these annotations into useful functional categories. Additionally, viral contigs are further analyzed to
identify potential AMGs. This is done via assigning an auxiliary score and flags representing the confidence
that a gene is both metabolic and viral.

Content homepage: https://github.com/WrightonLabCSU/DRAM

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/dram_neighborhoods/877bdba8fc5d

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dram_neighborhoods

Type: unrestricted

Revision: 3:877bdba8fc5d

This revision can be installed: True

Times cloned / installed: 132