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Repository jbrowse2

Name: jbrowse2

Owner: fubar

Synopsis: JBrowse2 Genome Browser integrated as a Galaxy Tool

Detailed description:

JBrowse2 is a fast, extensible JS+HTML5 genome browser.

This repository contains a couple of tools aimed at building up a complete
JBrowse2 Genome Browser deployment from raw data files such as gff3, bed, bam,
vcf, blastxml, and more...

The tools produce a ready-to-deploy HTML file and associated processed
datasets, allowing visualization of the genome either from within Galaxy, or
outside of Galaxy.

The tool must be allowlisted for HTML content. If BAM files are displayed, it
must be served from an proper webserever (e.g. apache or nginx) implementing
range requests, though sendfile is optimal.

https://jbrowse.org

Content homepage: https://jbrowse.org

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/fubar/jbrowse2/878c27dfea9d

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fubar/jbrowse2

Type: unrestricted

Revision: 113:878c27dfea9d

This revision can be installed: True

Times cloned / installed: 1011