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Repository scanpy_run_umap
Name: scanpy_run_umap
Owner: ebi-gxa
Synopsis: Wrapper for the scanpy-scripts tool suite: Scanpy RunUMAP
Scanpy is a scalable toolkit for analyzing single-cell gene expression data.  It includes
preprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
Content homepage: https://scanpy.readthedocs.io
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_umap/88c1516e25e0
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap
Type: unrestricted
Revision: 0:88c1516e25e0
This revision can be installed: True
Times cloned / installed: 1353

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
visualise cell clusters using UMAP 1.3.2+galaxy1 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA