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Repository sam_pileup

Name: sam_pileup

Owner: devteam

Synopsis: Generate pileup from BAM dataset

Detailed description:

Uses SAMTools'' pileup command to produce a pileup dataset from
a provided BAM dataset. It generates two types of pileup datasets depending on the
specified options. If Call consensus according to MAQ model? option is set to No,
the tool produces simple pileup. If the option is set to Yes, a ten column pileup
dataset with consensus is generated.

Content homepage: https://www.htslib.org/

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam_pileup

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/sam_pileup/890d97772e2a

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/sam_pileup

Type: unrestricted

Revision: 3:890d97772e2a

This revision can be installed: True

Times cloned / installed: 3438