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Repository stacks2_denovomap
Name: stacks2_denovomap
Owner: iuc
Synopsis: Stacks2: de novo map (from the Stacks2 tool suite)
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.
Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

http://catchenlab.life.illinois.edu/stacks/
Content homepage: http://catchenlab.life.illinois.edu/stacks/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/stacks2_denovomap/89eb29319bf4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap
Type: unrestricted
Revision: 6:89eb29319bf4
This revision can be installed: True
Times cloned / installed: 451

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
the Stacks pipeline without a reference genome (denovo_map.pl) 2.55+galaxy3 20.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis