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Repository samtools_bedcov
Name: samtools_bedcov
Owner: devteam
Synopsis: Calculate read depth on BAM files
This tool uses the SAMtools toolkit to produce read depth per BED region.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_bedcov
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_bedcov/8c3472790020
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov
Type: unrestricted
Revision: 1:8c3472790020
This revision can be installed: True
Times cloned / installed: 7633
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
calculate read depth for a set of genomic intervals 2.0 any

Categories
SAM - Tools for manipulating alignments in the SAM format
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis