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Repository sam2interval

Name: sam2interval

Owner: devteam

Synopsis: Convert SAM to interval.

Detailed description:

Converts positional information from a SAM dataset into interval
format with 0-based start and 1-based end. CIGAR string of SAM format is used to
compute the end coordinate.

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam2interval

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/sam2interval/8c737b8ddc45

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/sam2interval

Type: unrestricted

Revision: 0:8c737b8ddc45

This revision can be installed: True

Times cloned / installed: 2998