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Repository scimap_mcmicro_to_anndata

Name: scimap_mcmicro_to_anndata

Owner: goeckslab

Synopsis: Wrapper for scimap tool: Convert McMicro Output to Anndata

Detailed description:

Scimap is a scalable toolkit for analyzing spatial molecular data.
The underlying framework is generalizable to spatial datasets mapped to XY coordinates.
The package uses the anndata framework making it easy to integrate with other popular
single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization,
clustering, spatial analysis and differential spatial testing.
The Python-based implementation efficiently deals with large datasets of millions of cells.

Content homepage: https://scimap.xyz/

Development repository: https://github.com/goeckslab/tools-mti/tree/main/tools/scimap

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/goeckslab/scimap_mcmicro_to_anndata/8ca435ec19be

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/goeckslab/scimap_mcmicro_to_anndata

Type: unrestricted

Revision: 1:8ca435ec19be

This revision can be installed: True

Times cloned / installed: 168