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Repository tbprofiler

Name: tbprofiler

Owner: iuc

Synopsis: Processes M. tuberculosis sequence data to infer strain type and identify known drug resistance markers.

Detailed description:

TB-Profiler aligns reads to the H37Rv reference using bowtie2, BWA-MEM, BWA-MEM2 or minimap2 and then calls
variants (by default using freebayes). These variants are then compared to a drug-resistance database to
predict drug resistance. For Illumina data the number of reads supporting the drug resistance variant
is also reported.

Content homepage: https://github.com/jodyphelan/TBProfiler

Development repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/8cb134b8c1a5

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler

Type: unrestricted

Revision: 20:8cb134b8c1a5

This revision can be installed: True

Times cloned / installed: 1077