Repository revision
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Repository varscan_copynumber
Name: varscan_copynumber
Owner: iuc
Synopsis: Wrapper for VarScan copynumber
VarScan is a variant caller for high-throughput sequencing data.
Content homepage: https://dkoboldt.github.io/varscan/
Development repository: https://github.com/galaxyproject/iuc/tree/master/tools/varscan
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/varscan_copynumber/8d8de66233ea
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/varscan_copynumber
Type: unrestricted
Revision: 1:8d8de66233ea
This revision can be installed: True
Times cloned / installed: 618

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Determine relative tumor copy number from tumor-normal pileups 2.4.3.1 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA