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Repository nc_rna
Name: nc_rna
Owner: enios
Synopsis: Analysis of lncRNA
Analysis of ncRNA:
EzLncPred
RankProd
rnainteractions
Biotranlsator
TCGA_heatmap_survival
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/enios/nc_rna
Type: unrestricted
Revision: 24:8ec95406dfc1
This revision can be installed: True
Times cloned / installed: 159

Contents of this repository

Name Description Version Minimum Galaxy Version
cbind horizontally 1.0.0 16.01
Differential expression with RankProd 1.0.0 16.01
Filters and/or converts GFF3/GTF2 records 0.11.6.0 16.01
Visualize interaction networks from JSON file 1.0.0 16.01
Test your signature on TCGA data 1.0.0 16.01
Differential expression with RankProd 1.0.0 16.01
"RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis" 1.0.0 16.01
"discard_fasta_sequences_less_than_specific_length" 1.0.0 16.01
compare assembled transcripts to a reference annotation 1.0.0 16.01
"ezLncPred" 1.0.0 16.01

Categories
Convert Formats - Tools for converting data formats
Epigenetics - Tools for analyzing Epigenetic/Epigenomic datasets
RNA - Utilities for RNA
Systems Biology - Systems biology tools
Transcriptomics - Tools for use in the study of Transcriptomics.