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Repository snpeff
Name: snpeff
Owner: iuc
Synopsis: SnpEff is a genetic variant annotation and effect prediction toolbox
Variant annotation and effect prediction tools. It annotates and
predicts the effects of variants on genes. There
are data managers for tha Galaxy admin to download genome databases.
Content homepage: http://snpeff.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/8f92c2b26e6d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff
Type: unrestricted
Revision: 20:8f92c2b26e6d
This revision can be installed: True
Times cloned / installed: 8155

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
database from Genbank or GFF record 4.3+T.galaxy3 16.01
list chromosome names/lengths 4.3+T.galaxy1 16.01
download a pre-built database 4.3+T.galaxy2 16.01
annotate variants 4.3+T.galaxy1 16.01
list available databases 4.3+T.galaxy1 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA