Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository btyper
Name: btyper
Owner: estrain
Synopsis: Virulence-based classification of Bacillus cereus group
BTyper is a tool that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data.

Additionally, antimicrobial resistance (AMR) gene detection was added in BTyper version 2.0.0 (released 2017-06-29), a function that can be used with sequencing data from any bacterial species.
Content homepage: https://github.com/lmc297/BTyper
Development repository: https://github.com/lmc297/BTyper
Link to this repository: https://toolshed.g2.bx.psu.edu/view/estrain/btyper/90984da4b414
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/estrain/btyper
Type: unrestricted
Revision: 14:90984da4b414
This revision can be installed: True
Times cloned / installed: 420

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
3.4.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis