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Repository pizzly
Name: pizzly
Owner: iuc
Synopsis: Pizzly is a program for detecting gene fusions from RNA-Seq data of cancer samples.
Pizzly is a program for detecting gene fusions from RNA-Seq data of cancer samples.
It uses pseudoalignment and requires running Kallisto with the --fusion parameter (available in version 0.43.1 or later) on paired-end reads.
Pizzly also requires the reference transcriptome in FASTA format as well as a GTF file describing the transcriptome. 
The Ensembl transcriptomes are recommended.
Content homepage: https://github.com/pmelsted/pizzly/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/pizzly/91ef4a171202
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pizzly
Type: unrestricted
Revision: 1:91ef4a171202
This revision can be installed: True
Times cloned / installed: 329

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- fast fusion detection using kallisto 0.37.3.1 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.