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Repository influx_si
Name: influx_si
Synopsis: metabolic flux estimation based on [in]stationary labeling
Optimize free fluxes and optionaly metabolite concentrations of a given static metabolic network defined in an FTBL file to fit 13C data provided in the same FTBL file.
Type: unrestricted
Revision: 0:9b03a930b08b
This revision can be installed: True
Times cloned / installed: 148

Repository README files - may contain important installation or license information

Metabolic flux estimation ------------------------- `influx_si` can be used for metabolic flux estimation based on labeling data from MS and/or NMR measurements. `influx_s` is used for stationary labeling and `influx_i` for instationary one (hence the '_s' and '_i' in the names). Tha name `influx_si` is used as common for both tools. The input for `influx_si` in one or several FTBL files, each describing a given labeling experiment and options to use during estimation. In addition, for `influx_i` a file with time course data has to be provided for each FTBL file. The output is a zip archive with files generated by `influx_si`. Among the most important is file ending with `_res.kvh` which contains the main information about estimated parameters, their statistics and so on. If, in your FTBL file, you have requested ploting information, it can be found in respective .pdf file. For detailed documentation about `influx_si` and accompanying tools see https://metasys.insa-toulouse.fr/software/influx/doc/ For getting a standalone version of `influx_si` see https://metasys.insa-toulouse.fr/software/influx/ Author: Serguei Sokol License: GPL2 © INRAE 2020

Contents of this repository

Name Description Version Minimum Galaxy Version
metabolic flux analysis 5.1.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics