Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository edger
Name: edger
Owner: iuc
Synopsis: Perform RNA-Seq differential expression analysis using edgeR pipeline
Apply edgeR pipeline on a table of tab separated count data to generate HTML report for differential expression analysis. Report includes BCV, MDS and smear plots as well as summarised table of statistics on each gene.
Content homepage: http://bioconductor.org/packages/release/bioc/html/edgeR.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/edger/9bdff28ae1b1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/edger
Type: unrestricted
Revision: 0:9bdff28ae1b1
This revision can be installed: True
Times cloned / installed: 3843

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Perform differential expression of count data 3.16.5 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics