Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository samtools_mpileup
Name: samtools_mpileup
Owner: devteam
Synopsis: MPileup SNP and indel caller
Generate BCF or pileup for one or multiple BAM files. Alignment
records are grouped by sample identifiers in @RG header lines. If sample identifiers
are absent, each input file is regarded as one sample.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_mpileup/9da0311ab1dd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup
Type: unrestricted
Revision: 13:9da0311ab1dd
This revision can be installed: True
Times cloned / installed: 13566

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
multi-way pileup of variants 2.1.6 20.05

Categories
SAM - Tools for manipulating alignments in the SAM format