Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository miniprot_index
Name: miniprot_index
Owner: iuc
Synopsis: Miniprot tool: Miniprot index
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. 
It is primarily intended for annotating protein-coding genes in a new species using known genes from 
other species. Miniprot is similar to GeneWise and Exonerate in functionality but it can map proteins 
to whole genomes and is much faster at the residue alignment step.
Content homepage: https://github.com/lh3/miniprot
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniprot
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/9e2772125405
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/miniprot_index
Type: unrestricted
Revision: 4:9e2772125405
This revision can be installed: True
Times cloned / installed: 517

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
build a genome index for miniprot 0.12+galaxy0 21.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis