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Repository snpsift_genesets
Name: snpsift_genesets
Owner: iuc
Synopsis: Annotate SnpEff vcf with genesets such as Gene Ontology (GO), KEGG, Reactome
Gene set annotations, such as Gene Ontology (GO), KEGG, Reactome, etc.,
can be added to a SnpEff annotated file using SnpSift geneSets command.
The VCF file must be annotated using SnpEff before perforimg Gene Sets annotations.
Content homepage: http://snpeff.sourceforge.net/SnpSift.html#geneSets
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_genesets/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpsift_genesets/9e6fa49c1077
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift_genesets
Type: unrestricted
Revision: 0:9e6fa49c1077
This revision can be installed: True
Times cloned / installed: 513
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_snpeff_4_0 revision 792d8f4485fb owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
snpEff 4.0 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Annotating GeneSets, such as Gene Ontology, KEGG, Reactome 4.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA