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Repository cufflinks

Name: cufflinks

Owner: devteam

Synopsis: Galaxy wrappers for the Cufflinks tool.

Detailed description:

Cufflinks assembles transcripts, estimates their abundances, and
tests for differential expression and regulation in RNA-Seq samples. It accepts
aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts.
Cufflinks then estimates the relative abundances of these transcripts based on how
many reads support each one.

Content homepage: http://cole-trapnell-lab.github.io/cufflinks/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cufflinks

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/cufflinks/a1ea9af8d5f4

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cufflinks

Type: unrestricted

Revision: 9:a1ea9af8d5f4

This revision can be installed: True

Times cloned / installed: 9283

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
cufflinks	2.2.1	package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Cufflinks View tool metadata	transcript assembly and FPKM (RPKM) estimates for RNA-Seq data	2.2.1.0	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

transcript assembly and FPKM (RPKM) estimates for RNA-Seq data

2.2.1.0

any