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Repository nanopolish_variants
Name: nanopolish_variants
Owner: bgruening
Synopsis: Nanopolish tool: Nanopolish variants
Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base 
modifications, call SNPs and indels with respect to a reference genome and more.
Content homepage: https://github.com/jts/nanopolish
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_variants/a3afc5f0a96c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants
Type: unrestricted
Revision: 7:a3afc5f0a96c
This revision can be installed: True
Times cloned / installed: 688

Contents of this repository

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Name Description Version Minimum Galaxy Version
- Find SNPs of basecalled merged Nanopore reads and polishes the consensus sequences 0.13.2+galaxy0 16.01