Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository crossmap_region
Name: crossmap_region
Owner: iuc
Synopsis: Wrapper for the CrossMap tool suite: CrossMap region
CrossMap is versatile tool to convert genome coordinates or annotation files between genome
assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
and VCF, reading from remote servers and file compression are supported.
Content homepage: http://crossmap.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/crossmap_region/a50ef4d58c90
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/crossmap_region
Type: unrestricted
Revision: 2:a50ef4d58c90
This revision can be installed: True
Times cloned / installed: 272

Repository README files - may contain important installation or license information

Readme files

CrossMap wrapper for Galaxy

CrossMap is versatile tool to convert genome coordinates or annotation files between genome assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF, GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF and VCF, reading from remote servers and file compression are supported.

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Convert genome coordinates or annotation files between genome assemblies 0.7.0+galaxy0 20.05

Categories
Convert Formats - Tools for converting data formats
Genomic Interval Operations - Tools for operating on genomic intervals