Repository ctat_star_fusion
Name: ctat_star_fusion
Owner: trinity_ctat
Synopsis: STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads.
STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set. - https://github.com/STAR-Fusion/STAR-Fusion/wiki
Content homepage: https://github.com/NCIP/Trinity_CTAT_galaxy/wiki
Development repository: https://github.com/NCIP/Trinity_CTAT_galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/trinity_ctat/ctat_star_fusion/a530fa18e9e8
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_star_fusion
Type: unrestricted
Revision: 0:a530fa18e9e8
This revision can be installed: True
Times cloned / installed: 188

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Fusion-finding Pipeline Using the STAR Aligner 1.0.1 17.05

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis