The settings for name, version and type from a contained tool configuration file's requirement tag does not match the information for the following tool dependency definitions in the tool_dependencies.xml file, so these tool dependencies have no relationship with any tools within this repository.
* name: ggplot2, type: package, version: 0.9.3
Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository metilene
Name: metilene
Owner: rnateam
Synopsis: Differential DNA methylation calling
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/metilene
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/metilene/a538bbdae31b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/metilene
Type: unrestricted
Revision: 1:a538bbdae31b
This revision can be installed: True
Times cloned / installed: 668
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_cairo_1_12_14 revision 0a73735c3161 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_r_2_15_0 revision 6c34eaa82fed owned by devteam (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 32ff063c4de8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_bedtools_2_24 revision 3416a1d4a582 owned by iuc
Repository package_gnu_coreutils_8_22 revision ac64dfe4b1fb owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R 3.2.1 package
bedtools 2.24 package
ggplot2 0.9.3 package
gnu_coreutils 8.22 package
metilene 0.2-4 package
perl 5.18.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
calling differentially methylated regions from bisulfite sequencing data 0.2-4.1 any

Categories
RNA - Utilities for RNA
Statistics - Tools for generating statistics