Repository proteomiqon_peptidespectrummatching
Name: proteomiqon_peptidespectrummatching
Owner: galaxyp
Synopsis: Given raw an MS run in the mzLite format, this tool iterates across all MS/MS scans, determines precursor charge states and possible peptide spectrum matches using reimplementations of SEQUEST, Andromeda and XTandem.
Given raw a MS run in the mzLite or mzml format, this tool iterates accross all recorded MS/MS scans and determines the charge state of precursor ions which were selected for fragmentation. 
With this it is possible to query the peptide data base for every precursor ion mass +/- a tolerance (which defines the so called 'search space') and retrieve peptides that are theoretical candidates
for a match. For each of the peptide candidates we create an theoretical spectrum in silico and compare it to the measured MS/MS scan.
Content homepage: https://csbiology.github.io/ProteomIQon/tools/PeptideSpectrumMatching.html
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidespectrummatching
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/proteomiqon_peptidespectrummatching/a79a24eb9e76
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_peptidespectrummatching
Type: unrestricted
Revision: 1:a79a24eb9e76
This revision can be installed: True
Times cloned / installed: 166

Contents of this repository

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Name Description Version Minimum Galaxy Version
iterates across all MS/MS scans in an MS run, determines precursor charge states and possible peptide spectrum matches. 0.0.7 20.05

Categories
Proteomics - Tools enabling the study of proteins