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Repository kleborate
Name: kleborate
Owner: iuc
Synopsis: Screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC)
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species
complex (KpSC) for MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
ICEKp associated virulence loci (yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA));
virulence plasmid associated loci (salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2))
antimicrobial resistance determinants (acquired genes, SNPs, gene truncations and intrinsic β-lactamases), and
K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Content homepage: https://github.com/katholt/Kleborate/wiki
Development repository: https://github.com/katholt/Kleborate
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/kleborate/a7c43271312c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/kleborate
Type: unrestricted
Revision: 3:a7c43271312c
This revision can be installed: True
Times cloned / installed: 112

Contents of this repository

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Name Description Version Minimum Galaxy Version
screen genome assemblies of Klebsiella pneumoniae 2.3.2+galaxy1 21.05

Categories
Metagenomics - Tools enabling the study of metagenomes