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Repository bed_to_protein_map

Name: bed_to_protein_map

Owner: galaxyp

Synopsis: Converts a BED file to a tabular list of exon locations

Detailed description:

Converts a BED file (12 column) to a 6 column tabular list of exon locations
with columns: name,chrom,start,end,strand,cds_start,cds_end.
It relies on the ThickStart and ThckEnd columns of the BED file to define
the coding start and end of a protein sequence.

The tabular format can be converted to a sqlite table for the quick lookup of
the genomic location of any animo acid in the protein sequence.

Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/bed_to_protein_map

Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/bed_to_protein_map/a7c58b43cbaa

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map

Type: unrestricted

Revision: 1:a7c58b43cbaa

This revision can be installed: True

Times cloned / installed: 473

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
bed to protein map View tool metadata	genomic location of proteins for MVP	0.2.0	16.01