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Repository cat_summarise
Name: cat_summarise
Owner: iuc
Synopsis: CAT summarise from the CAT package
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs.
A CAT reference dataset requires about 250 GB of disk space.
Content homepage: https://github.com/dutilh/CAT
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/cat_summarise/a8216def322b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cat_summarise
Type: unrestricted
Revision: 3:a8216def322b
This revision can be installed: True
Times cloned / installed: 426

Contents of this repository

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Name Description Version Minimum Galaxy Version
the number of contigs or bins assigned to each taxonomic name 5.2.3+galaxy0 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes