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Repository samtools_mpileup
Name: samtools_mpileup
Owner: devteam
Synopsis: MPileup SNP and indel caller
Generate BCF or pileup for one or multiple BAM files. Alignment
records are grouped by sample identifiers in @RG header lines. If sample identifiers
are absent, each input file is regarded as one sample.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_mpileup/aa0ef6f0ee89
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup
Type: unrestricted
Revision: 5:aa0ef6f0ee89
This revision can be installed: True
Times cloned / installed: 13578
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
call variants 2.0 any

Categories
SAM - Tools for manipulating alignments in the SAM format