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Repository baredsc_2d
Name: baredsc_2d
Owner: iuc
Synopsis: Wrapper for baredSC: baredSC 2d tool.
baredSC for Bayesian Approach to Retreive Expression Distribution of Single Cel uses the raw counts and the total number of UMI for each cell. The PDF is approximated by a number of 1d or 2d gaussians provided by the user. The likelihood is estimated using the asumption that the raw counts follow a Poisson distribution of parameter equal to the proportion of mRNA for the gene in the cell multiplied by the total number of UMI identified in this cell.
Content homepage: https://github.com/lldelisle/baredSC
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/aa4a6f0916b4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/baredsc_2d
Type: unrestricted
Revision: 1:aa4a6f0916b4
This revision can be installed: True
Times cloned / installed: 466

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Compute distribution for a pair of genes 1.1.2+galaxy0 20.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Visualization - Tools for visualizing data