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Repository sam_to_bam
Name: sam_to_bam
Owner: devteam
Synopsis: Convert SAM format to BAM format.
This tool uses the SAMtools toolkit to produce an indexed BAM file based on a sorted input SAM file.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/sam_to_bam/ab4c4e07eb3c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam
Type: unrestricted
Revision: 3:ab4c4e07eb3c
This revision can be installed: True
Times cloned / installed: 11989
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
converts SAM format to BAM format 1.1.3 any

Categories
SAM - Tools for manipulating alignments in the SAM format