Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository mirdeep2_mapper
Name: mirdeep2_mapper
Owner: rnateam
Synopsis: MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data.
MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
Content homepage: https://www.mdc-berlin.de/8551903/en/
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/mirdeep2/mirdeep2_mapper
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/mirdeep2_mapper/ab8cd78709e1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper
Type: unrestricted
Revision: 2:ab8cd78709e1
This revision can be installed: True
Times cloned / installed: 1261
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie 0.12.7 package
mirdeep2_mapper 2.0 package
perl 5.18.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
process and map reads to a reference genome 2.0.0 any

Categories
RNA - Utilities for RNA