| Uses the open source tool sambamba view for filtering reads
(binaries are available at https://github.com/lomereiter/sambamba/releases) Expression syntax is described here: https://github.com/lomereiter/sambamba/wiki/[sambamba-view]-Filter-expression-syntax An example of filtering condition that can be supplied: (read_name >= 'EAS114_' and second_of_pair) or (not unmapped and [UQ] >= 40) |
hg clone https://toolshed.g2.bx.psu.edu/repos/lomereiter/sambamba_filter
| Name | Version | Type | |
|---|---|---|---|
| sambamba | 0.4.7 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| on flags, fields, and tags using Sambamba | 1.1 | any | |