| Bwa-mem2 is the next version of the bwa-mem algorithm in bwa. It produces alignment identical to bwa and is ~1.3-3.1x faster depending on the use-case, dataset and the running machine. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - map medium and long reads (> 100 bp) against reference genome | 2.3+galaxy0 | 24.2 | |
| Build BWA-MEM2 reference index | 2.3+galaxy0 | 20.01 | |