Tools for MD analysis developed by the Biomolecular Dynamics group (https://github.com/moldyn/) at the University of Freiburg, including dimensionality reduction, clustering, Langevin simulations and dcTMD |
hg clone https://toolshed.g2.bx.psu.edu/repos/chemteam/biomd_neqgamma
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
for calculating friction and free energy profiles from TMD ensembles | 0.1.5.2+galaxy1 | 16.01 |