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Repository naive_variant_caller
Name: naive_variant_caller
Owner: blankenberg
Synopsis: Naive Variant Caller tool (NVC)
This tool is a naive variant caller (NVC) that processes aligned sequencing reads from the BAM format and produces a VCF file containing per position variant calls. This tool allows multiple BAM files to be provided as input and utilizes read group information to make calls for individual samples.

https://github.com/blankenberg/nvc
Content homepage: https://github.com/blankenberg/nvc
Development repository: https://github.com/BlankenbergLab/galaxy-tools-blankenberg/tree/master/tools/naive_variant_caller
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/blankenberg/naive_variant_caller/aff38ea879f1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller
Type: unrestricted
Revision: 15:aff38ea879f1
This revision can be installed: True
Times cloned / installed: 1404

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- tabulate variable sites from BAM datasets 0.0.3 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA