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Repository rbpbench
Name: rbpbench
Owner: rnateam
Synopsis: Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs
RBPBench is multi-function tool to evaluate CLIP-seq and other genomic region 
data using a comprehensive collection of known RBP binding motifs. RBPBench can 
be used for a variety of purposes, from RBP motif search (database or user-supplied 
RBPs) in genomic regions, over motif co-occurrence analysis, to benchmarking 
CLIP-seq peak caller methods as well as comparisons across cell types and 
CLIP-seq protocols.
Content homepage: https://github.com/michauhl/RBPBench
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/rbpbench/b022c6591515
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/rbpbench
Type: unrestricted
Revision: 1:b022c6591515
This revision can be installed: True
Times cloned / installed: 143

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs 0.7+galaxy0 22.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA
CLIP-seq - Tools for CLIP-seq