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Repository mircounts
Name: mircounts
Owner: artbio
Synopsis: Generates miRNA count lists from read alignments to mirBase.
Generates pre-miRNA and mature miRNA count tables from read alignments to
pre-miRNA sequences and a gff file, both downloaded from mirBase. Produces also
read coverage plots of pre-miRNAs.
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/artbio/mircounts/b045c30fb768
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/mircounts
Type: unrestricted
Revision: 13:b045c30fb768
This revision can be installed: True
Times cloned / installed: 432

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Counts miRNA alignments from small RNA sequence data 1.4.0 16.01

Categories
RNA - Utilities for RNA
Transcriptomics - Tools for use in the study of Transcriptomics.